Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015797527.1_cds_XP_016455405.1_4889
CDS Infomation

[gene=LOC107779472] [db_xref=GeneID:107779472] [protein=alpha-farnesene synthase-like] [protein_id=XP_016455405.1] [location=complement(join(2846..3136,3239..3487,4305..4446,4555..4773,4863..5235,6427..6703,6783..6959))] [gbkey=CDS]
Sequence

ATGATGCTATCCCAAACCACGTCTTACAGAAACATTGTGTCCCTTTTTTCCACTATGCAG
ACTAAGAAACTTCATAGTACTATTAAAAAACAAAGTCATCCTGAAAGGAAGATTTCTACC
TATAAACCAAACATTTGGAAATATGATCATCTACTTACTCTTACAAGTGAATATTCTGAT
GAGAAGTATAAAGCTCAGGCTGAGAAGCTAAAAGAGAAAGTCAGTTGCACGTTTTCAAAC
ACTATTTGTCCCCTGGACCTGCTAGAGCTTATAGACAGCATTGACAAACTTGGACTCAGT
TGTTACTTCGAGGTTGAAACCAAGGAAGCTTTAGAAAAGATAATAATGTCCGTGAAAAGC
AGTGGTTATTATTCGAGCTCGAAGGAGGAGGATCTGTATGCGATTGCATTGTGCTTCAGG
CTACTCAGGGAACATGGCCACCATGCTTCACAAGATATGTTAAAGGACTTCTTCGATGGC
AAAGGAAAGCTGAAAGTCTCAGATGTGAAAACATTATTGGAGCTTTTGGAAGGATCATGT
CTGAGCGTGGAAGGTGAAAACGTACTAGACGACACACGATTGTTCACAACCAAAAATCTC
AAGAGTCTTCTATCTAAATCAGATTACACATTTACTACTAAGGAATATTTGAGAAATAGG
TTGAGTTGTCCATTGGCATGGAGAGTGAAATGGTATGCCGTAAGAACACACATCTCTGCT
CAAGAACTTGAATGCAACGGCACTAATCCAATGTTGCTGAAGTTGGCAAAACTTAACTTC
AATATAATTCAAGCCACGCACCAAAAGGATCTCAAACACGTATTAAGATGGTGGATGAAT
GTTTCAATAGTTGAAGATTTGAGCTTTACAAGGGATCGGATAGTAGAAAGCTTCTTTTAC
GCTGTAGGAGTTGCCTCTGAGCCTCAACATGGAAGCATGAGAATATGGCTCACCAAAGTG
ATTGAGTTGGTGCTAATAATAGATAATGTTTATGATATTTATGGTTCATTAGCCCAAGTG
CAGCAATTCACTCGTGCCATAGAGACGTGGGATCCAAATGAAGTAGAAGGGCTGCCAGAA
TGTATGCAGATCTGTTTCAGGTCTTTGCATGATACAATAGAAGAGATATCTGTTGAAATT
CAACAACAAAAGAGTGGCCTTTCAGCATTACCTTATCTGAAACAAGTGTGGGTCAACTTT
TGCAAAGCCTTGCTGTTGGAAGCAACGTGGTACCACAAAGGCCATATACCAACACTTGAA
GAGTACCTTAATAATGGGTGGATCTCATCTTCCGGCCCTTTGCTTTCCTTTCATGTGATT
TTTGGTGTAACAAATAAAATAACGAAAGAAACCCTTCATTTATACGAAGATTGCCGTGAA
ATTATTTACCACACTTCGGTTGTAATTCGACTTTGCAATGATCAGGGTACCTCAGCGTCG
GAGCTAGAGAGAGGTGATGTTGCTTCATCAATTTTATGTTACATGCAACAAGAAAATGTT
TCAGAGGATGTAGCCCGAGAGCATATCGAAAGCATAATTTTGGATTCGTGGAAAAAGATC
AATTACCATTTTAATACTCTTTCTACATCACAACAAAAACTCGTCAAACATGTAGTAAAT
GAAGCACGGATGACACATGTCATGTACCAATTTGGAGATGGATTTGGGGTTCAAGATGGT
GAAACTCGAGATCAAGTCTTGTTCAACTTGGTTAATCCTATTACTTAA

Peptide Sequence

PEP ID

XP_016455405.1
PEP Infomation

PREDICTED: alpha-farnesene synthase-like [Nicotiana tabacum]
Sequence

MMLSQTTSYRNIVSLFSTMQTKKLHSTIKKQSHPERKISTYKPNIWKYDHLLTLTSEYSD
EKYKAQAEKLKEKVSCTFSNTICPLDLLELIDSIDKLGLSCYFEVETKEALEKIIMSVKS
SGYYSSSKEEDLYAIALCFRLLREHGHHASQDMLKDFFDGKGKLKVSDVKTLLELLEGSC
LSVEGENVLDDTRLFTTKNLKSLLSKSDYTFTTKEYLRNRLSCPLAWRVKWYAVRTHISA
QELECNGTNPMLLKLAKLNFNIIQATHQKDLKHVLRWWMNVSIVEDLSFTRDRIVESFFY
AVGVASEPQHGSMRIWLTKVIELVLIIDNVYDIYGSLAQVQQFTRAIETWDPNEVEGLPE
CMQICFRSLHDTIEEISVEIQQQKSGLSALPYLKQVWVNFCKALLLEATWYHKGHIPTLE
EYLNNGWISSSGPLLSFHVIFGVTNKITKETLHLYEDCREIIYHTSVVIRLCNDQGTSAS
ELERGDVASSILCYMQQENVSEDVAREHIESIILDSWKKINYHFNTLSTSQQKLVKHVVN
EARMTHVMYQFGDGFGVQDGETRDQVLFNLVNPIT

Transcript Sequence

Gene sequence data has not been registered.